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1

The industrial melanism mutation in British peppered moths is a transposable element

Hof, Arjen E. van’t, Campagne, Pascal, Rigden, Daniel J., Yung, Carl J., Lingley, Jessica, Quail, Michael A., Hall, Neil, Darby, Alistair C., Saccheri, Ilik J.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.47 MB

english, 2016

2

From Protein Structure to Function with Bioinformatics ||

J. Rigden, Daniel

Year:

2017

Language:

english

File:

PDF, 12.75 MB

english, 2017

3

The structure of pyruvate kinase from Leishmania mexicana reveals details of the allosteric transition and unusual effector specificity

Daniel J Rigden, Simon E.V Phillips, Paul A.M Michels, Linda A Fothergill-Gilmore

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 908 KB

english, 1999

4

ConKit: a python interface to contact predictions

Simkovic, Felix, Thomas, Jens M. H., Rigden, Daniel J.

Journal:

Year:

2017

Language:

english

File:

PDF, 168 KB

english, 2017

5

Candidate-gene based GWAS identifies reproducible DNA markers for metabolic pyrethroid resistance from standing genetic variation in East African Anopheles gambiae

Weetman, David, Wilding, Craig S., Neafsey, Daniel E., Müller, Pie, Ochomo, Eric, Isaacs, Alison T., Steen, Keith, Rippon, Emily J., Morgan, John C., Mawejje, Henry D., Rigden, Daniel J., Okedi, Loyce

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.33 MB

english, 2018

6

The 27th annual Nucleic Acids Research database issue and molecular biology database collection

Rigden, Daniel J, Fernández, Xosé M

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 177 KB

2020

7

Structural modeling of a plant disease resistance gene product domain

Daniel J. Rigden, Luciane V. Mello, David J. Bertioli

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 238 KB

english, 2000

8

Engineering the pH-dependence of kinetic parameters of maize glutathione S-transferase I by site-directed mutagenesis

Nikolaos E Labrou, Daniel J Rigden, Yannis D Clonis

Journal:

Biomolecular Engineering

Year:

2004

Language:

english

File:

PDF, 191 KB

english, 2004

9

Understanding the cell in terms of structure and function: insights from structural genomics

Daniel J Rigden

Journal:

Current Opinion in Biotechnology

Year:

2006

Language:

english

File:

PDF, 268 KB

english, 2006

10

An extracellular calcium-binding domain in bacteria with a distant relationship to EF-hands

Daniel J. Rigden, Mark J. Jedrzejas, Michael Y. Galperin

Journal:

FEMS Microbiology Letters

Year:

2003

Language:

english

File:

PDF, 543 KB

english, 2003

11

Plant α-amylase inhibitors and their interaction with insect α-amylases : Structure, function and potential for crop protection

Octávio L. Franco, Daniel J. Rigden, Francislete R. Melo, Maria F. Grossi-de-Sá

Journal:

Year:

2002

Language:

english

File:

PDF, 461 KB

english, 2002

12

Leishmania donovani phosphofructokinase : Gene characterization, biochemical properties and structure-modelling studies

Claudia López, Nathalie Chevalier, Véronique Hannaert, Daniel J. Rigden, Paul A. M. Michels, Jose Luis Ramirez

Journal:

Year:

2002

Language:

english

File:

PDF, 944 KB

english, 2002

13

Kinetic characterization, structure modelling studies and crystallization of Trypanosoma brucei enolase

Véronique Hannaert, Marie-Astrid Albert, Daniel J. Rigden, M. Theresa da Silva Giotto, Otavio Thiemann, Richard C. Garratt, Joris Van Roy, Fred R. Opperdoes, Paul A. M. Michels

Journal:

Year:

2003

Language:

english

File:

PDF, 536 KB

english, 2003

14

Trypanosoma brucei contains a 2,3-bisphosphoglycerate independent phosphoglycerate mutase

Nathalie Chevalier, Daniel J. Rigden, Joris Van Roy, Fred R. Opperdoes, Paul A. M. Michels

Journal:

Year:

2000

Language:

english

File:

PDF, 1.05 MB

english, 2000

15

Activity of wheat α-amylase inhibitors towards bruchid α-amylases and structural explanation of observed specificities

Octávio L. Franco, Daniel J. Rigden, Francislete R. Melo, Carlos Bloch Jr, Carlos P. Silva, Maria F. Grossi de Sá

Journal:

Year:

2000

Language:

english

File:

PDF, 909 KB

english, 2000

16

Glycerol kinase of Trypanosoma brucei : Cloning, molecular characterization and mutagenesis

Ivica Králová, Daniel J. Rigden, Fred R. Opperdoes, Paul A. M. Michels

Journal:

Year:

2000

Language:

english

File:

PDF, 1.40 MB

english, 2000

17

Characterization of active-site mutants of Schizosaccharomyces pombe phosphoglycerate mutase : Elucidation of the roles of amino acids involved in substrate binding and catalysis

Jacqueline Nairn, Doris Duncan, Naomi E. Price, Sharon M. Kelly, Linda A. Fothergill-Gilmore, Stanislava Uhrinova, Paul N. Barlow, Daniel J. Rigden, Nicholas C. Price

Journal:

Year:

2000

Language:

english

File:

PDF, 1.02 MB

english, 2000

18

Improving Cry8Ka toxin activity towards the cotton boll weevil (Anthonomus grandis)

Gustavo R Oliveira, Maria CM Silva, Wagner A Lucena, Erich YT Nakasu, Alexandre AP Firmino, Magda A Beneventi, Djair SL Souza, José E Gomes, José DA de Souza, Daniel J Rigden, Hudson B Ramos, Carlos R

Journal:

BMC Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.15 MB

english, 2011

19

An inactivated nuclease-like domain in RecC with novel function: implications for evolution

Daniel John Rigden

Journal:

BMC Structural Biology

Year:

2005

Language:

english

File:

PDF, 3.21 MB

english, 2005

20

Inhibition of trypsin by cowpea thionin: Characterization, molecular modeling, and docking

Francislete R. Melo, Daniel J. Rigden, Octávio L. Franco, Luciane V. Mello, Maria B. Ary, Maria F. Grossi de Sá, Carlos Bloch Jr.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2002

Language:

english

File:

PDF, 232 KB

english, 2002

21

Overlapping binding sites for trypsin and papain on a Kunitz-type proteinase inhibitor from Prosopis juliflora

Octávio L. Franco, Maria F. Grossi de Sá, Maurício P. Sales, Luciane V. Mello, Adeliana S. Oliveira, Daniel J. Rigden

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2002

Language:

english

File:

PDF, 234 KB

english, 2002

22

Genome-based identification of a carbohydrate binding module in Streptococcus pneumoniae hyaluronate lyase

Daniel J. Rigden, Mark J. Jedrzejas

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 398 KB

english, 2003

23

Molecular modeling and inhibitory activity of cowpea cystatin against bean bruchid pests

Juliana M. Aguiar, Octávio L. Franco, Daniel J. Rigden, Carlos Bloch Jr., Ana C.S. Monteiro, Victor M.Q. Flores, Tânia Jacinto, José Xavier-Filho, Antonia E.A. Oliveira, Maria F. Grossi-de-Sá, Kátia V

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 318 KB

english, 2006

24

Genome-based identification and characterization of a putative mucin-binding protein from the surface of Streptococcus pneumoniae

Daniela Bumbaca, James E. Littlejohn, Hannah Nayakanti, Alexander H. Lucas, Daniel J. Rigden, Michael Y. Galperin, Mark J. Jedrzejas

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 703 KB

english, 2007

25

An unsuspected ecdysteroid/steroid phosphatase activity in the key T-cell regulator, Sts-1: Surprising relationship to insect ecdysteroid phosphate phosphatase

Lyndsay Davies, Ian P. Anderson, Philip C. Turner, Alan D. Shirras, Huw H. Rees, Daniel J. Rigden

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 344 KB

english, 2007

26

Monomorphic subtelomeric DNA in the filamentous fungus,Metarhizium anisopliae,contains a RecQ helicase-like gene

Peter W. Inglis, Daniel J. Rigden, Luciane V. Mello, Edward J. Louis, M. Cléria. Valadares-Inglis

Journal:

Molecular Genetics and Genomics

Year:

2005

Language:

english

File:

PDF, 793 KB

english, 2005

27

Ferric iron uptake genes are differentially expressed in the presence of copper sulfides inAcidithiobacillusferrooxidansstrain LR

Lúcio F. C. Ferraz, Leandro C. L. Verde, Renato Vicentini, Ana P. Felício, Marcelo L. Ribeiro, Fabiana Alexandrino, Maria T. M. Novo, Oswaldo Garcia, Daniel J. Rigden, Laura M. M. Ottoboni

Journal:

Antonie van Leeuwenhoek

Year:

2011

Language:

english

File:

PDF, 371 KB

english, 2011

28

Use of phage display to select novel cystatins specific for Acanthoscelides obtectus cysteine proteinases

Francislete R. Melo, Márcia O. Mello, Octávio L. Franco, Daniel J. Rigden, Luciane V. Mello, Aline M. Genú, Márcio C. Silva-Filho, Steve Gleddie, Maria Fátima Grossi-de-Sá

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2003

Language:

english

File:

PDF, 354 KB

english, 2003

29

Distinct roles for Caf1, Ccr4, Edc3 and CutA in the co-ordination of transcript deadenylation, decapping and P-body formation in Aspergillus nidulans

Igor Y. Morozov, Meriel G. Jones, Dave G. Spiller, Daniel J. Rigden, Christoph Dattenböck, Rene Novotny, Joseph Strauss, Mark X. Caddick

Journal:

Molecular Microbiology

Year:

2010

Language:

english

File:

PDF, 653 KB

english, 2010

30

The structure–function relationship in the clostripain family of peptidases

Nikolaos E. Labrou, Daniel J. Rigden

Journal:

Year:

2004

Language:

english

File:

PDF, 403 KB

english, 2004

31

Cloning and sequencing of a gene encoding pyruvate kinase from Schizosaccharomyces pombe; implications for quaternary structure and regulation of the enzyme

Jacqueline Nairn, Susan Smith, Patricia J. Allison, Daniel Rigden, Linda A. Fothergill-Gilmore, Nicholas C. Price

Journal:

FEMS Microbiology Letters

Year:

1995

Language:

english

File:

PDF, 507 KB

english, 1995

32

6-Phosphofructo-2-kinase and fructose-2,6-bisphosphatase in Trypanosomatidae : Molecular characterization, database searches, modelling studies and evolutionary analysis

Nathalie Chevalier, Luc Bertrand, Mark H. Rider, Fred R. Opperdoes, Daniel J. Rigden, Paul A. M. Michels

Journal:

Year:

2005

Language:

english

File:

PDF, 621 KB

english, 2005

33

Structural flexibility in Trypanosoma brucei enolase revealed by X-ray crystallography and molecular dynamics

Marcos V. de A. S. Navarro, Sandra M. Gomes Dias, Luciane V. Mello, Maria T. da Silva Giotto, Sabine Gavalda, Casimir Blonski, Richard C. Garratt, Daniel J. Rigden

Journal:

Year:

2007

Language:

english

File:

PDF, 445 KB

english, 2007

34

Order within a mosaic distribution of mitochondrial c-type cytochrome biogenesis systems?

James W. A. Allen, Andrew P. Jackson, Daniel J. Rigden, Antony C. Willis, Stuart J. Ferguson, Michael L. Ginger

Journal:

Year:

2008

Language:

english

File:

PDF, 1.04 MB

english, 2008

35

Identification of differentially expressed cDNA sequences in ovaries of sexual and apomictic plants ofBrachiaria brizantha

Júlio C.M. Rodrigues, Gláucia B. Cabral, Diva M.A. Dusi, Luciane V. de Mello, Daniel J. Rigden, Vera T.C. Carneiro

Journal:

Plant Molecular Biology

Year:

2003

Language:

english

File:

PDF, 546 KB

english, 2003

36

Evolutionary analysis of fructose 2,6-bisphosphate metabolism

Paul A. M. Michels, Daniel J. Rigden

Journal:

Year:

2006

Language:

english

File:

PDF, 762 KB

english, 2006

37

Sequence conservation in the chagasin family suggests a common trend in cysteine proteinase binding by unrelated protein inhibitors

Daniel J. Rigden, Vladimir V. Mosolov, Michael Y. Galperin

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 336 KB

english, 2002

38

PrfA protein of Bacillus species: Prediction and demonstration of endonuclease activity on DNA

Daniel J. Rigden, Peter Setlow, Barbara Setlow, Irina Bagyan, Richard A. Stein, Mark J. Jedrzejas

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 379 KB

english, 2002

39

A cofactor-dependent phosphoglycerate mutase homolog from Bacillus stearothermophilus is actually a broad specificity phosphatase

Daniel J. Rigden, Irina Bagyan, Ejvis Lamani, Peter Setlow, Mark J. Jedrzejas

Journal:

Protein Science

Year:

2001

Language:

english

File:

PDF, 477 KB

english, 2001

40

Prediction of antimicrobial peptides based on the adaptive neuro-fuzzy inference system application

Fabiano C. Fernandes, Daniel J. Rigden, Octavio L. Franco

Journal:

Year:

2012

Language:

english

File:

PDF, 1.32 MB

english, 2012

41

Phosphoglycerate mutase from Schizosaccharomyces pombe: development of an expression system and characterisation of three histidine mutants of the enzyme

Jacqueline Nairn, Nicholas C. Price, Sharon M. Kelly, Daniel Rigden, Linda A. Fothergill-Gilmore, Tino Krell

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1996

Language:

english

File:

PDF, 678 KB

english, 1996

42

Identification, characterization and essentiality of the unusual peroxin 13 from Trypanosoma brucei

Emilie Verplaetse, Daniel J. Rigden, Paul A.M. Michels

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research

Year:

2009

Language:

english

File:

PDF, 2.28 MB

english, 2009

43

Ab initio protein modelling reveals novel human MIT domains

Daniel J. Rigden, Han Liu, Sebastian D. Hayes, Sylvie Urbé, Michael J. Clague

Journal:

Year:

2009

Language:

english

File:

PDF, 485 KB

english, 2009

44

Does distant homology with Evf reveal a lipid binding site in Bacillus thuringiensis cytolytic toxins?

Daniel J. Rigden

Journal:

Year:

2009

Language:

english

File:

PDF, 756 KB

english, 2009

45

Mining metagenomic data for novel domains: BACON, a new carbohydrate-binding module

Luciane V. Mello, Xin Chen, Daniel J. Rigden

Journal:

Year:

2010

Language:

english

File:

PDF, 589 KB

english, 2010

46

Identification and modelling of a PPM protein phosphatase fold in the Legionella pneumophila deAMPylase SidD

Daniel J. Rigden

Journal:

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

47

Structural variability of the ubiquitin specific protease DUSP-UBL double domains

Paul R. Elliott, Han Liu, Martyna W. Pastok, Günter J. Grossmann, Daniel J. Rigden, Michael J. Clague, Sylvie Urbé, Igor L. Barsukov

Journal:

Year:

2011

Language:

english

File:

PDF, 1.30 MB

english, 2011

48

Trypanosomes contain two highly different isoforms of peroxin PEX13 involved in glycosome biogenesis

Ana Brennand, Daniel J. Rigden, Paul A.M. Michels

Journal:

Year:

2012

Language:

english

File:

PDF, 1.60 MB

english, 2012

49

Autophagy in parasitic protists: Unique features and drug targets

Ana Brennand, Melisa Gualdrón-López, Isabelle Coppens, Daniel J. Rigden, Michael L. Ginger, Paul A.M. Michels

Journal:

Molecular and Biochemical Parasitology

Year:

2011

Language:

english

File:

PDF, 1.97 MB

english, 2011

50

The PA14 domain, a conserved all-β domain in bacterial toxins, enzymes, adhesins and signaling molecules

Daniel J Rigden, Luciane V Mello, Michael Y Galperin

Journal:

Trends in Biochemical Sciences

Year:

2004

Language:

english

File:

PDF, 137 KB

english, 2004

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